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Isopropanol

Company: Thermo Fisher Scientific
Catalog#: A426P-4
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Characterize the Interaction of the DNA Helicase PriA with the Stalled DNA Replication Fork Using Atomic Force Microscopy
Author:
Date:
2021-03-05
[Abstract]  

In bacteria, the restart of stalled DNA replication forks requires the DNA helicase PriA. PriA can recognize and remodel abandoned DNA replication forks, unwind DNA in the 3'-to-5' direction, and facilitate the loading of the helicase DnaB onto the DNA to restart replication. ssDNA-binding protein (SSB) is typically present at the abandoned forks, protecting the ssDNA from nucleases. Research that is based on the assays for junction dissociation, surface plasmon resonance, single-molecule FRET, and x-ray crystal structure has revealed the helicase activity of PriA, the SSB-PriA interaction, and structural information of PriA helicase. Here, we used Atomic Force Microscopy (AFM) to visualize the interaction between PriA and DNA substrates with or without SSB in the absence of ATP to

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[摘要]  [摘要]在细菌中,停滞的DNA复制叉的重新启动需要DN A解旋酶PriA 。PriA可以识别并重塑废弃的DNA复制叉,在3'到5'方向展开DNA,并促进解旋酶DnaB加载到DNA上以重新开始复制​​。ssDNA结合蛋白(SSB)通常存在于废弃的叉子上,从而保护ssDNA免受核酸酶的破坏。该研究是基于所述测定法离解结,表面等离振子共振,单分子FRET,和x射线晶体结构已经揭示的解旋酶活性PRIA ,SSB- PriA相互作用以及PriA解旋酶的结构信息。在这里,我们使用原子力显微镜(AFM)可视化了在不存在ATP的情况下在有或没有SSB的情况下PriA和带有或不带有SSB的DNA底物之间的相互作用,以描绘PriA在其ATP催化的DNA解链反应之前的底物识别模式。该协议描述了获取高分辨率AFM图像的步骤以及数据分析和表示的细节。

[背景]当DNA复制遇到障碍或断裂时,需要对其进行修复并随后重新启动(Kogoma,1997; Cox等,2000; McGlynn和Lloyd,2002;G abbai和Marians,2010; Michel等,2018)。 )。在细菌中,DNA解旋酶PRIA通过识别废弃DNA复制叉,从而便于重新组装的介导这一过程复制体的解旋酶和装载DNAB (Wickner和赫维茨,1975; Zavitz和Marians,1992; ...

Expression and Purification of Yeast-derived GPCR, Gα and Gβγ Subunits for Structural and Dynamic Studies
Author:
Date:
2021-02-20
[Abstract]  

In the last several years, as evidence of a surged number of GPCR-G complex structures, the expressions of GPCRs and G proteins for structural biology have achieved tremendous successes, mostly in insect and mammalian cell systems, resulting in more than 370 structures of over 70 GPCRs have been resolved. However, the challenge remains, particularly in the conformational transition and dynamics study area where a much higher quantity of the receptors and G proteins is required even in comparison to X-ray and cryo-EM (5 mg/ml, 3 μl/sample) when NMR spectroscopy (5 mg/ml, 250 μl /sample) is applied. As a result, the expression levels of the insect and mammalian systems are also difficult to meet this demand, not to mention the prohibitive cost of producing GPCRs and G proteins using

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[摘要]  [摘要]在过去的几年中,作为GPCR-G复杂结构数量激增的证据,用于结构生物学的GPCR和G蛋白的表达已取得了巨大的成功,主要是在昆虫和哺乳动物细胞系统中,导致了370多个已解决了70多个GPCR的结构。但是,挑战仍然存在,特别是在构象转变和动力学研究领域,即使与X射线和冷冻EM相比(5 mg / ml,3μl /样品),也需要大量的受体和G蛋白。当应用NMR光谱法(5 mg / ml,250μl /样品)时。结果,i的表达水平 nsect和哺乳动物系统也很难满足这一需求,更不用说使用绝大多数系统使用这些系统生产GPCR和G蛋白的成本高昂了。因此,需要探索一种具有广泛适用性的有效,负担得起的实用方法。毕赤酵母表达系统已在GPCR制备中显示出其希望,并具有其他真核表达系统无法比拟的许多优点。在该系统中表达的GPCR价格便宜,易于操作,并且能够进行同位素标记。在此,我们提出最近开发并在我们的实验室升级的相关协议,包括表达和纯化的毕赤酵母衍生GPCR以G沿α和G βγ蛋白。我们预期这些协议将促进GPCR及其复合物的构象转变和动力学研究。


[背景] G蛋白偶联受体(GPCR)是最大的膜蛋白家族,在许多(病理)生理活动中起着关键作用。GPCR的或它们的效应物的功能障碍会导致各种病症,包括神经变性疾病,癌症,和慢性炎症(Overington等人,2006) ...

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