| Quantitative Irreversible Tethering (qIT) for Target-directed Covalent Fragment Screening
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Author:
Date:
2020-12-20
[Abstract] Small molecules that react to form covalent bonds with proteins are widely used as biological tools and therapeutic agents. Screening cysteine-reactive fragments against a protein target is an efficient way to identify chemical starting points for covalent probe development. Mass spectrometry is often used to identify the site and degree of covalent fragment binding. However, robust hit identification requires characterization of the kinetics of covalent binding that can be readily achieved using quantitative irreversible tethering. This screening platform uses a non-specific cysteine-reactive fluorogenic probe to monitor the rate of reaction between covalent fragments and cysteine containing biomolecules. Fragment libraries are simultaneously screened against the target protein and ...
[摘要] [摘要]与蛋白质反应形成共价键的小分子被广泛用作生物学工具和治疗剂。筛选针对蛋白质靶标的半胱氨酸反应性片段是鉴定共价探针开发的化学起点的有效方法。质谱通常用于鉴定共价片段结合的位点和程度。然而,强大的命中鉴定需要的共价结合的动力学表征是 使用定量不可逆的网络共享可以轻松实现。该筛选平台使用非特异性的半胱氨酸反应性荧光探针来监测共价片段与含半胱氨酸的生物分子之间的反应速率。同时针对目标蛋白和作为对照的谷胱甘肽筛选片段文库,以鉴定具有动力学选择性的命中片段,以对目标进行共价修饰。通过定量不可逆的束缚进行筛选,可以解释单个片段内在反应性的变化,从而实现可靠的命中鉴定和排名。
[背景]位点定向配体发现最早在2000报道,并利用表面暴露半胱氨酸残基共价陷阱二硫键连接的片段,其结合在相邻的口袋(Erlanson等人,2000 )。从那时起,不可逆的半胱氨酸靶向抑制剂已广泛普及,现在已成为多种肿瘤学适应症的一线治疗方法,其中值得注意的例子是针对BTK和EGFR以及以前不可药物治疗的靶标,例如KRAS(G12C)。随着这些发展,基于共价片段的配体发现已成为设计靶标特异性共价抑制剂的有效途径(Resnick et al。,2019 ...
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| Agrobacterium-mediated Transformation of Sweet Basil (Ocimum basilicum)
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Author:
Date:
2020-11-20
[Abstract] Sweet basil (Ocimum basilicum) is a popular herb with high economic value and is currently threatened by a severe oomycete disease. An efficient transformation method is a prerequisite for gene functional analysis to accelerate molecular breeding and deploy effective disease management strategies, and breeding through genetic engineering. Here we present a detailed protocol for a highly efficient Agrobacterium tumefaciens-mediated transformation method for sweet basil, which was established based on a previously reported method by other researchers, with modifications on several aspects, including growth of sweet basil, age of plants used for explants, preparation and concentration of Agrobacteria. This protocol allows researchers in academia and agroindustry to generate transgenic sweet ...
[摘要] [摘要]甜罗勒(Ocimum basilicum )是一种流行的草药,具有很高的经济价值,目前正受到严重的卵菌病的威胁。高效的转化方法是基因功能分析加速分子育种和部署有效疾病管理策略以及通过基因工程进行育种的前提。在这里,我们介绍一种高效的根癌农杆菌介导的甜罗勒转化方法的详细协议,该方法是根据其他研究人员先前报道的方法建立的 ,在几个方面进行了修改,包括甜罗勒的生长,用于外植体的植物的年龄,农杆菌的制备和浓度。该方案使学术界和农用工业的研究人员能够以简单,快速和高度可重复的方式生成转基因甜罗勒植物。另外,该协议可适用于转化Ocimum属内的其他物种。
[背景]甜罗勒(Ocimum basilicum )是一种流行的草药,因其显着的药用,烹饪和美容特性而具有很高的经济价值。它的全球生产受到卵菌病原体Peronospora belbahrii引起的严重霜霉病的阻碍。涉及甜罗勒种间杂交的传统育种一直困扰着F1的不育,并且难以分离出不良性状。另一方面,甜罗勒的基因工程为研究分子生物学,拓宽理想性状来源和加快育种过程提供了平台。利用农杆菌介导的稳定转化为甜罗勒建立了高效的CRISPR / Cas9介导的ObDMR1基因定向诱变基因编辑系统(Navet and ...
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| Advances in Proximity Ligation in situ Hybridization (PLISH)
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Author:
Date:
2020-11-05
[Abstract] Understanding tissues in the context of development, maintenance and disease requires determining the molecular profiles of individual cells within their native in vivo spatial context. We developed a Proximity Ligation in situ Hybridization technology (PLISH) that enables quantitative measurement of single cell gene expression in intact tissues, which we have now updated. By recording spatial information for every profiled cell, PLISH enables retrospective mapping of distinct cell classes and inference of their in vivo interactions. PLISH has high sensitivity, specificity and signal to noise ratio. It is also rapid, scalable, and does not require expertise in molecular biology so it can be easily adopted by basic and clinical researchers.
[摘要] [摘要]在发育,维持和疾病的背景下了解组织需要确定单个细胞在其天然体内空间范围内的分子谱。我们开发了一种邻近连接原位杂交技术(PLISH),该技术能够定量测量完整组织中单细胞基因的表达,现已更新。通过记录每个分析细胞的空间信息,PLISH可以回顾性绘制不同细胞类别并推断其体内 互动。PLISH具有很高的灵敏度,特异性和信噪比。它也快速,可扩展,并且不需要分子生物学方面的专门知识,因此基础和临床研究人员可以轻松地采用它。
[背景技术]我们最近开发了一种复用原位称为PLISH(邻位连接杂交技术原位杂交)(Nagendran等人,2018)。PLISH与其他现有的空间转录组学技术不同,因为它结合了高性能,快速多路复用,低成本和技术简单性(Wilbrey -Clark等人,2020年)。可以通过自动计算完整的冷冻或石蜡包埋组织中单细胞表达图谱来分析PLISH结果,它与同时进行的免疫染色兼容。
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