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TRIzol

Company: Life Technologies
Catalog#: 15596018
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RI-SEC-seq: Comprehensive Profiling of Nonvesicular Extracellular RNAs with Different Stabilities
Author:
Date:
2021-02-20
[Abstract]  

Exosomes and other extracellular vesicles (EVs) are considered the main vehicles transporting RNAs in extracellular samples, including human bodily fluids. However, a major proportion of extracellular RNAs (exRNAs) do not copurify with EVs and remain in ultracentrifugation supernatants of cell-conditioned medium or blood serum. We have observed that nonvesicular exRNA profiles are highly biased toward those RNAs with intrinsic resistance to extracellular ribonucleases. These highly resistant exRNAs are interesting from a biomarker point of view, but are not representative of the actual bulk of RNAs released to the extracellular space. In order to understand exRNA dynamics and capture both stable and unstable RNAs, we developed a method based on size-exclusion chromatography (SEC)

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[摘要]  [摘要]外来体和其他细胞外囊泡(EVs)被认为是在细胞外样品(包括人体液)中运输RNA的主要载体。但是,大部分细胞外RNA(exRNA )不能与EV共纯化,而是保留在细胞条件培养基或血清的超速离心上清液中。我们已经观察到非囊泡的exRNA概况高度偏向那些对细胞外核糖核酸酶具有固有抗性的RNA。从生物标志物的角度来看,这些高度抗性的exRNA很有趣,但不能代表释放到细胞外空间的RNA的实际体积。为了了解exRNA动态并捕获稳定和不稳定的RNA,我们开发了一种基于大小排阻色谱(SEC)分馏的RNase抑制剂(RI)处理的细胞条件培养基(RI-SEC-seq)的方法。这种方法使我们能够鉴定和研究细胞外核糖体和tRNA,并提供了可以在不久的将来影响生物标志物发现的细胞外RNAome的动态视图。


图形概要:


所述RI-SEC-SEQ协议的概述:大小排阻层析的级分的测序从nonvesicular胞样品用或不用RNA酶抑制剂(+/- RI)


[背景]细胞外RNA(exRNA )参与细胞间通讯,并且在微创液体活检中有望成为疾病的生物标志物(O'Brien et ...

EmPC-seq: Accurate RNA-sequencing and Bioinformatics Platform to Map RNA Polymerases and Remove Background Error
Author:
Date:
2021-02-20
[Abstract]  

Transcription errors can substantially affect metabolic processes in organisms by altering the epigenome and causing misincorporations in mRNA, which is translated into aberrant mutant proteins. Moreover, within eukaryotic genomes there are specific Transcription Error-Enriched genomic Loci (TEELs) which are transcribed by RNA polymerases with significantly higher error rates and hypothesized to have implications in cancer, aging, and diseases such as Down syndrome and Alzheimer’s. Therefore, research into transcription errors is of growing importance within the field of genetics. Nevertheless, methodological barriers limit the progress in accurately identifying transcription errors. Pro-Seq and NET-Seq can purify nascent RNA and map RNA polymerases along the genome but cannot be

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[摘要]  [摘要]转录错误可通过改变表观基因组并引起mRNA的错误整合而严重影响生物体内的代谢过程,从而将其翻译为异常的突变蛋白。此外,真核基因组内有特定转录错误富集的基因组基因座(TEELs),它们由RNA聚合酶与显著更高的错误率转录并推测为具有影响在癌症,老化和疾病例如唐氏综合征和阿尔茨海默'秒。因此,在遗传学领域对转录错误的研究越来越重要。尽管如此,方法上的障碍限制了准确识别转录错误的进展。Pro-Seq和NET-Seq可以沿基因组纯化新生RNA并绘制RNA聚合酶,但不能用于鉴定转录突变。在这里,我们本背景误差模型耦合的精密核圆形测序上运行(EMPC -SEQ),一种方法COMBIN荷兰国际集团测定和圆形测序核上运行与背景误差模型精确地检测新生转录错误和有效地辨别TEELs基因组中。

[背景]核糖核苷酸错掺导致的转录错误在所有活生物体中无处不在(Carey,2015)。假设每个信使RNA(mRNA)可以翻译2-4千次(Schwanhausser et al。,2011),并且许多特殊RNA在给定时间每个细胞仅表达一次(Islam et al。,2011; Pelechano et al。,2011)。,2010),即使是关键残基的单个转录错误也会使特定蛋白质的表达产生很大差异。另外,转录错误可加速蛋白质聚集,导致人类中与年龄有关的疾病(van ...

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