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Eppendorf BioPhotometer®

Company: Eppendorf
Catalog#: D30
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EmPC-seq: Accurate RNA-sequencing and Bioinformatics Platform to Map RNA Polymerases and Remove Background Error
Author:
Date:
2021-02-20
[Abstract]  

Transcription errors can substantially affect metabolic processes in organisms by altering the epigenome and causing misincorporations in mRNA, which is translated into aberrant mutant proteins. Moreover, within eukaryotic genomes there are specific Transcription Error-Enriched genomic Loci (TEELs) which are transcribed by RNA polymerases with significantly higher error rates and hypothesized to have implications in cancer, aging, and diseases such as Down syndrome and Alzheimer’s. Therefore, research into transcription errors is of growing importance within the field of genetics. Nevertheless, methodological barriers limit the progress in accurately identifying transcription errors. Pro-Seq and NET-Seq can purify nascent RNA and map RNA polymerases along the genome but cannot be

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[摘要]  [摘要]转录错误可通过改变表观基因组并引起mRNA的错误整合而严重影响生物体内的代谢过程,从而将其翻译为异常的突变蛋白。此外,真核基因组内有特定转录错误富集的基因组基因座(TEELs),它们由RNA聚合酶与显著更高的错误率转录并推测为具有影响在癌症,老化和疾病例如唐氏综合征和阿尔茨海默'秒。因此,在遗传学领域对转录错误的研究越来越重要。尽管如此,方法上的障碍限制了准确识别转录错误的进展。Pro-Seq和NET-Seq可以沿基因组纯化新生RNA并绘制RNA聚合酶,但不能用于鉴定转录突变。在这里,我们本背景误差模型耦合的精密核圆形测序上运行(EMPC -SEQ),一种方法COMBIN荷兰国际集团测定和圆形测序核上运行与背景误差模型精确地检测新生转录错误和有效地辨别TEELs基因组中。

[背景]核糖核苷酸错掺导致的转录错误在所有活生物体中无处不在(Carey,2015)。假设每个信使RNA(mRNA)可以翻译2-4千次(Schwanhausser et al。,2011),并且许多特殊RNA在给定时间每个细胞仅表达一次(Islam et al。,2011; Pelechano et al。,2011)。,2010),即使是关键残基的单个转录错误也会使特定蛋白质的表达产生很大差异。另外,转录错误可加速蛋白质聚集,导致人类中与年龄有关的疾病(van ...

A Quick Method for Screening Biocontrol Efficacy of Bacterial Isolates against Bacterial Wilt Pathogen Ralstonia solanacearum in Tomato
Author:
Date:
2020-11-20
[Abstract]  

Ralstonia solanacearum is a bacterial phytopathogen able to cause bacterial wilt disease in more than 200 plant species. Plant disease biocontrol strategies are used for controlling this disease and tomato is used as a model plant to conduct R. solanacearum associated studies. Conventional screening methods such as seed bacterization, soil drenching and root bacterization (in grown plants) to assess the ability of biocontrol bacteria to antagonize R. solanacearum under in planta conditions in different hosts are time-consuming and costly. A fast, cost effective method is a key requirement to advance the research on R. solanacearum biocontrol. In this protocol, we have inoculated the roots of tomato seedlings with bacterial isolates showing antagonistic activity against R. solanacearum

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[摘要]  [摘要]青枯雷尔氏菌是能够导致青枯病在超过2个细菌植物病原体00植物物种。植物病害生物防治策略用于控制这种疾病和番茄被用来作为模式植物进行青枯菌相关的研究。常规的筛选方法,例如种子杀菌,土壤浸湿和根部杀菌(在生长中的植物中),以评估生物控制细菌在不同宿主中在植物条件下拮抗青枯菌的能力,既耗时又昂贵。一个快速,经济有效的方法是推动研究的关键要求 青枯菌生物防治。在此协议中,我们已在细菌的分离株上接种了番茄幼苗的根,这些分离株在体外条件下显示出对茄青枯菌的拮抗活性。用拮抗细菌处理16小时后,通过成熟的根浸法将青枯菌接种到幼苗中。然后将幼苗保持在受控条件和枯萎/死苗的数目,记录最多10个天交ř 。青枯菌接种。从每个测试的分离物的记录计算生物防治效力。此协议是比在感测已经可用的协议的优点在于,它可以在很短的持续时间内完成(〜18天番茄)并且没有保持苗培养介质的需求。该方法可用于在短时间内以最小的成本快速筛选大量细菌分离株和不同宿主基因型。

[背景[ Ralstonia solanacearum ]是一种土壤传播的细菌性植物病原体,在200多个农作物中引起细菌性枯萎病,代表50个不同的科(Seleim等人,2014),其中大部分来自茄科(Thera等人,2010)。它可以在土壤中壮成长长达数年之久,并具有在寄主到达时感染的能力(Coutinho and ...

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