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Company: NEB
Catalog#: B7204S
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A Novel Method to Construct Binary CRISPR Vectors for Plant Transformation by Single Round of PCR Amplification
Author:
Date:
2021-04-05
[Abstract]  

CRISPR/Cas9 is an established and flexible tool for genome editing. However, most methods used to generate expression clones for the CRISPR/Cas9 are time-consuming. Hence, we have developed a one-step protocol to introduce sgRNA expression cassette(s) directly into binary vectors (Liu et al., 2020). In this approach, we have optimized the multiplex PCR to produce an overlapping PCR product in a single reaction to generate the sgRNA expression cassette. We also amplified two sgRNA expression cassettes through a single round of PCR. Then, the sgRNA expression cassette(s) is cloned into the binary vectors in a Gateway LR or Golden gate reaction. The system reported here provides a much more efficient and simpler procedure to construct expression clones for CRISPR/Cas9-mediated genome

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[摘要]  [摘要] CRISPR / Cas9是一种成熟且灵活的基因组编辑工具。但是,大多数用于生成CRISPR / Cas9表达克隆的方法都很耗时。因此,我们开发了一种将sgRNA表达盒直接引入二元载体的一步协议(Liu等人,2020年)。在这种方法中,我们优化了多重PCR,以在单个反应中产生重叠的PCR产物,从而生成sgRNA表达盒。我们还通过单轮PCR扩增了两个sgRNA表达盒。然后,在Gateway LR或Golden gate反应中将sgRNA表达盒克隆到二元载体中。本文报道的系统为构建用于CRISPR / Cas9介导的基因组编辑的表达克隆提供了更有效,更简单的程序。在此协议中,我们描述了使用此系统的详细分步说明。


[背景]乙acteria保卫针对病毒通过蛋白系统,由群集规则间隔开的短回文重复序列(CRISPR)中,CRISPR相关(CAS)蛋白质,CRISPR的RNA(crRNAs)和反式编码crRNA(tracrRNA)。现在,研究人员已经将其系统开发为用于靶向基因组编辑的关键工具。CRISPR –二元载体表达两个元素–具有靶序列的sgRNA(target-sgRNA)和Cas9蛋白–切割靶基因组区域。冯等人。(2013年)已经构建了网关载体,通过农杆菌介导的转化在植物中共表达Cas9和sgRNA ...

Characterize the Interaction of the DNA Helicase PriA with the Stalled DNA Replication Fork Using Atomic Force Microscopy
Author:
Date:
2021-03-05
[Abstract]  

In bacteria, the restart of stalled DNA replication forks requires the DNA helicase PriA. PriA can recognize and remodel abandoned DNA replication forks, unwind DNA in the 3'-to-5' direction, and facilitate the loading of the helicase DnaB onto the DNA to restart replication. ssDNA-binding protein (SSB) is typically present at the abandoned forks, protecting the ssDNA from nucleases. Research that is based on the assays for junction dissociation, surface plasmon resonance, single-molecule FRET, and x-ray crystal structure has revealed the helicase activity of PriA, the SSB-PriA interaction, and structural information of PriA helicase. Here, we used Atomic Force Microscopy (AFM) to visualize the interaction between PriA and DNA substrates with or without SSB in the absence of ATP to

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[摘要]  [摘要]在细菌中,停滞的DNA复制叉的重新启动需要DN A解旋酶PriA 。PriA可以识别并重塑废弃的DNA复制叉,在3'到5'方向展开DNA,并促进解旋酶DnaB加载到DNA上以重新开始复制​​。ssDNA结合蛋白(SSB)通常存在于废弃的叉子上,从而保护ssDNA免受核酸酶的破坏。该研究是基于所述测定法离解结,表面等离振子共振,单分子FRET,和x射线晶体结构已经揭示的解旋酶活性PRIA ,SSB- PriA相互作用以及PriA解旋酶的结构信息。在这里,我们使用原子力显微镜(AFM)可视化了在不存在ATP的情况下在有或没有SSB的情况下PriA和带有或不带有SSB的DNA底物之间的相互作用,以描绘PriA在其ATP催化的DNA解链反应之前的底物识别模式。该协议描述了获取高分辨率AFM图像的步骤以及数据分析和表示的细节。

[背景]当DNA复制遇到障碍或断裂时,需要对其进行修复并随后重新启动(Kogoma,1997; Cox等,2000; McGlynn和Lloyd,2002;G abbai和Marians,2010; Michel等,2018)。 )。在细菌中,DNA解旋酶PRIA通过识别废弃DNA复制叉,从而便于重新组装的介导这一过程复制体的解旋酶和装载DNAB (Wickner和赫维茨,1975; Zavitz和Marians,1992; ...

TetR Regulated in vivo Repression Technology to Identify Conditional Gene Silencing in Genetically Engineerable Bacteria Using Vibrio cholerae Murine Infections as Model System
Author:
Date:
2020-10-05
[Abstract]  Investigation of bacterial gene regulation upon environmental changes is still a challenging task. For example, Vibrio cholerae, a pathogen of the human gastrointestinal tract, faces diverse transient conditions in different compartments upon oral ingestion. Genetic reporter systems have been demonstrated to be extremely powerful tools to unravel gene regulation events in complex conditions, but so far focused mainly on gene induction. Herein, we describe the TetR-controlled recombination-based in vivo expression technology TRIVET, which allows detection of gene silencing events. TRIVET resembles a modified variant of the in vivo expression technology (IVET) as well as recombination-based in vivo expression technology (RIVET), which were used to ... [摘要]  [摘要]研究细菌基因对环境变化的调控仍然是一项艰巨的任务。例如,人胃肠道的病原体霍乱弧菌在口服后会在不同的隔室中遇到各种短暂的状况。事实证明,遗传报告系统是揭示复杂条件下基因调控事件的极有力工具,但到目前为止,它主要集中在基因诱导上。在本文中,我们描述了基于TetR控制的重组的体内表达技术TRIVET,该技术可检测基因沉默事件。TRIVET类似于体内表达技术(IVET)以及基于重组的体内变异体 表达技术(RIVET),用于鉴定宿主定殖过程中几种细菌的条件基因诱导。像它的前辈一样,TRIVET是一个基于单细胞的报告系统,可以通过耐药谱的表型变化以时空方式分析细菌基因的阻遏。简而言之,无启动子的tetR (编码转录阻遏物TetR)可通过转座子诱变随机地整合到细菌基因组中,或通过同源重组在目标启动子的下游特异性整合到细菌基因组中。的TetR导致的去阻遏的转录表达的减少的TetR控制解离TNPR,这反过来又导致切除ö F A Ñ抗生素抗性盒(也称为RES-盒)和改变的电阻曲线可观察到的通过划线上氨苄青霉素和卡那霉素板。然后可以将这种改变量化为抗性和非抗性分离株之间的比例。此外,新引入的第二报道基因,promot erless ...

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