| A Spectrofluorophotometrical Method Based on Fura-2-AM Probe to Determine Cytosolic Ca2+ Level in Pseudomonas syringae Complex Bacterial Cells
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Author:
Date:
2021-03-20
[Abstract] Calcium signaling is an emerging mechanism by which bacteria respond to environmental cues. To measure the intracellular free-calcium concentration in bacterial cells, [Ca2+]i, a simple spectrofluorometric method based on the chemical probe Fura 2-acetoxy methyl ester (Fura 2-AM) is here presented using Pseudomonad bacterial cells. This is an alternative and quantitative method that can be completed in a short period of time with low costs, and it does not require the induction of heterologously expressed protein-based probes like Aequorin. Furthermore, it is possible to verify the properties of membrane channels involved in Ca2+ entry from the extracellular matrix. This method is in particular valuable for measuring [Ca2+]i in the range of 0.1-39.8 µM in small cells like those of ...
[摘要] [摘要]钙信号传导是细菌对环境线索作出反应的一种新兴机制。为了测量细菌细胞中细胞内游离钙的浓度,在此使用假单胞菌细菌细胞,提出一种基于化学探针Fura 2-乙酰氧基甲基酯(Fura 2-AM)的简单分光荧光法[Ca 2+ ] i 。这是一种可替代的定量方法,可在短时间内以低成本完成,并且不需要诱导异源表达的基于蛋白质的探针(如水母发光蛋白)。此外,有可能验证参与Ca 2+从细胞外基质进入的膜通道的特性。该方法对于在像原核生物一样的小细胞中测量[Ca 2+ ] i在0.1-39.8 µM范围内特别有价值。
[背景] Ca 2+是一种新兴的细菌细胞内信使,会影响多种细胞过程,例如维持细胞完整性,细胞分裂(Dominguez等人,2015),运动性(Tisa和Alder,1995;Gode-Potratz等人,2010;Cruz等人,2012;Guragain等人,2013; Parker等人,2015;Fishman等人,2018 ),III型分泌物(DeBord等人,2003;Dasgupta等人,2003)。 ,2006; Gode-Potratz等,2010; Fi shman等,2018),基因表达(Dominguez等,2015),群体感应(Werthén和Lundgren,2001),生物膜形成(Patrauchan等,, 2001)。 2005年; ...
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| Generation of the Compression-induced Dedifferentiated Adipocytes (CiDAs) Using Hypertonic Medium
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Author:
Date:
2021-02-20
[Abstract] Current methods to obtain mesenchymal stem cells (MSCs) involve sampling, culturing, and expanding of primary MSCs from adipose, bone marrow, and umbilical cord tissues. However, the drawbacks are the limited numbers of total cells in MSC pools, and their decaying stemness during in vitro expansion. As an alternative resource, recent ceiling culture methods allow the generation of dedifferentiated fat cells (DFATs) from mature adipocytes. Nevertheless, this process of spontaneous dedifferentiation of mature adipocytes is laborious and time-consuming. This paper describes a modified protocol for in vitro dedifferentiation of adipocytes by employing an additional physical stimulation, which takes advantage of augmenting the stemness-related Wnt/β-catenin signaling. Specifically, this ...
[摘要] [摘要]目前的方法,以获得间充质干细胞(MSC)包括采样,培养,和扩大主要由脂肪,骨髓,和脐带组织的MSCs。然而,缺点是在总细胞在MSC池,和它们的衰减干性的数量有限在维生素- [R Ò扩张。作为替代资源,最近的天花板培养方法允许从成熟的脂肪细胞中生成去分化的脂肪细胞(DFAT)。然而,这种成熟脂肪细胞自发去分化的过程既费力又费时。本文描述了一种用于经修改协议在体外通过采用附加的物理刺激,其中脂肪细胞去分化TA KES扩充所述干性相关的优点的Wnt /β-catenin信号。具体来说,该协议利用含聚乙二醇(PEG)的高渗介质引入细胞外物理刺激以获得更高的效率,并引入更简单的脂肪细胞去分化程序。
[背景]脂肪组织由于其丰度大且侵袭性相对较低,因此是间充质干细胞(MSC)最具吸引力的来源之一(Shen等,2011 ;González-Cruz等,2012; Konno等人,2013)。脂肪来源的MSC,即从皮下脂肪组织的基质血管级分中分离,已被证实同时显示多谱系潜能的体外和体内(Anghileri等人,2008;冈萨雷斯。等人,2009;冈萨雷斯-雷伊等等人,2010; Jumabay等人,2010; Mao等人,2017和2019 ;Darnell等人,2018 ...
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| EmPC-seq: Accurate RNA-sequencing and Bioinformatics Platform to Map RNA Polymerases and Remove Background Error
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Author:
Date:
2021-02-20
[Abstract] Transcription errors can substantially affect metabolic processes in organisms by altering the epigenome and causing misincorporations in mRNA, which is translated into aberrant mutant proteins. Moreover, within eukaryotic genomes there are specific Transcription Error-Enriched genomic Loci (TEELs) which are transcribed by RNA polymerases with significantly higher error rates and hypothesized to have implications in cancer, aging, and diseases such as Down syndrome and Alzheimer’s. Therefore, research into transcription errors is of growing importance within the field of genetics. Nevertheless, methodological barriers limit the progress in accurately identifying transcription errors. Pro-Seq and NET-Seq can purify nascent RNA and map RNA polymerases along the genome but cannot be ...
[摘要] [摘要]转录错误可通过改变表观基因组并引起mRNA的错误整合而严重影响生物体内的代谢过程,从而将其翻译为异常的突变蛋白。此外,真核基因组内有特定转录错误富集的基因组基因座(TEELs),它们由RNA聚合酶与显著更高的错误率转录并推测为具有影响在癌症,老化和疾病例如唐氏综合征和阿尔茨海默'秒。因此,在遗传学领域对转录错误的研究越来越重要。尽管如此,方法上的障碍限制了准确识别转录错误的进展。Pro-Seq和NET-Seq可以沿基因组纯化新生RNA并绘制RNA聚合酶,但不能用于鉴定转录突变。在这里,我们本背景误差模型耦合的精密核圆形测序上运行(EMPC -SEQ),一种方法COMBIN荷兰国际集团测定和圆形测序核上运行与背景误差模型精确地检测新生转录错误和有效地辨别TEELs基因组中。
[背景]核糖核苷酸错掺导致的转录错误在所有活生物体中无处不在(Carey,2015)。假设每个信使RNA(mRNA)可以翻译2-4千次(Schwanhausser et al。,2011),并且许多特殊RNA在给定时间每个细胞仅表达一次(Islam et al。,2011; Pelechano et al。,2011)。,2010),即使是关键残基的单个转录错误也会使特定蛋白质的表达产生很大差异。另外,转录错误可加速蛋白质聚集,导致人类中与年龄有关的疾病(van ...
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