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NEB® 10-beta Competent E. coli (High Efficiency)

NEB ® 10-beta Competent 大肠杆菌(高效率)

Company: New England Biolabs
Catalog#: C3019H
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Random Insertional Mutagenesis of a Serotype 2 Dengue Virus Clone
Author:
Date:
2018-08-20
[Abstract]  Protein tagging is a powerful method of investigating protein function. However, modifying positive-strand RNA virus proteins in the context of viral infection can be particularly difficult as their compact genomes and multifunctional proteins mean even small changes can inactivate or attenuate the virus. Although targeted approaches to functionally tag viral proteins have been successful, these approaches are time consuming and inefficient. A strategy that has been successfully applied to several RNA viruses is whole-genome transposon insertional mutagenesis. A library of viral genomes, each containing a single randomly placed small insertion, is selected by passaging in cell culture and the insertion sites can be identified using Next Generation Sequencing (NGS). Here we describe a ... [摘要]  蛋白质标记是研究蛋白质功能的有效方法。然而,在病毒感染的情况下修饰正链RNA病毒蛋白可能特别困难,因为它们的紧密基因组和多功能蛋白意味着即使很小的变化也可以使病毒失活或减弱。尽管功能性标记病毒蛋白的靶向方法已经成功,但这些方法耗时且效率低。已经成功应用于几种RNA病毒的策略是全基因组转座子插入诱变。通过细胞培养中的传代选择病毒基因组文库,每个文库含有单个随机放置的小插入,并且可以使用下一代测序(NGS)鉴定插入位点。在这里,我们描述了用于登革病毒16681株血清型2的转座子诱变的方案。含有短随机放置插入物的突变登革病毒文库通过哺乳动物细胞传代,插入由有活力后代的NGS定位。该方案分为四个阶段:登革热cDNA克隆的转座子诱变,病毒基因组转染到允许细胞,分离病毒后代基因组和测序文库制备。

【背景】 ...

Target Gene Inactivation in Cyanobacterium Anabaena sp. PCC 7120
Author:
Date:
2016-08-05
[Abstract]  Anabaena sp. strain PCC 7120 has long served as a model organism for investigating N2-fixation, photosynthesis, and various plant-type metabolic pathways and biofuel production, as well as cellular differentiation (Xu et al., 2008, Halfmann et al., 2014, Golden and Yoon, 2003). Since more than 30,000 sequenced bacterial genomes are currently available (Land et al., 2015), specific gene inactivation and analyses of the corresponding mutant’s phenotype have become powerful tools in elucidating the function of a target gene. Here we describe a protocol to inactivate a target gene in Anabaena sp. PCC 7120 using a single-crossover approach. This approach requires only one-step cloning of an internal fragment of a target gene into an ... [摘要]   菌株PCC 7120长期充当用于研究N 2 - 固定,光合作用和各种植物类型代谢途径和生物燃料生产以及细胞分化的模式生物体(Xu等人,/em>。,2008,Halfmann等人,2014,Golden and Yoon,2003)。由于目前可获得超过30,000个测序的细菌基因组(Land等人,2015),特异性基因失活和相应突变体表型的分析已成为阐明靶基因功能的有力工具。在这里,我们描述了灭活anabaena sp中的靶基因的方案。 PCC 7120使用单交叉方法。该方法仅需要将靶基因的内部片段一步克隆到整合载体中以产生货物质粒。在货物质粒和鱼腥藻染色体之间的单次交换(同源重组)时,内源靶基因通过产生3'-和5'-缺失的片段而被破坏。该基因失活方案基于整合载体pZR606(Chen等人,2015),其可以广泛应用于其他蓝细菌物种以及其他原核生物中的基因失活。

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