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Author:
Date:
2016-08-20
[Abstract] VPS34 is the only class III phosphatidylinositol-3-kinase (PI3K) in mammalian cells and produces the vast majority of cellular phosphatidylinositol-3-phosphate [PI(3)P]. PI(3)P is a key signalling lipid that plays many membrane trafficking roles in processes such as endocytosis and autophagy. VPS34 is a key cellular regulator, loss of function can have catastrophic effects and is embryonic lethal (Zhou et al., 2011). The levels of cellular PI(3)P can be determined by fluorescent staining techniques and can be used to monitor effects upon VPS34 activity, however it is important to verify that any changes are mediated by VPS34, particularly as alternate pathways of PI(3)P production are possible such as via class II PI3Ks (Devereaux et al., 2013). Assaying VPS34 activity ...
[摘要] VPS34是哺乳动物细胞中唯一的III类磷脂酰肌醇-3-激酶（PI3K），并且产生绝大多数细胞磷脂酰肌醇-3-磷酸[PI（3）P]。 PI（3）P是一个关键的信号脂质，在诸如内吞作用和自噬的过程中起许多膜运输的作用。 VPS34是关键的细胞调节剂，功能丧失可具有灾难性作用并且是胚胎致死的（Zhou等人，2011）。 细胞PI（3）P的水平可以通过荧光染色技术确定，并且可以用于监测对VPS34活性的影响，然而重要的是验证任何变化由VPS34介导，特别是作为PI（3）的替代途径， P生产是可能的，例如通过II类PI3K（Devereaux等人，2013）。 直接在体外测定VPS34活性可以是描绘特定刺激的作用的关键阶段。
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Author:
Date:
2014-04-05
[Abstract] The fate of mRNA, in particular its stability, localization and rate of translation is regulated by RNA binding proteins assembling to messenger ribonucleoprotein (mRNP) complexes. To investigate the transcriptome-wide RNA binding sites of UPF1, the core factor of nonsense-mediated mRNA decay (NMD), we performed individual-nucleotide-resolution UV cross-linking and immunoprecipitation (iCLIP) (Zund et al., 2013) followed by high-throughput sequencing. The presented protocol is optimized to investigate the RNA-binding sites of UPF1 and is based on previously described studies (Konig et al., 2010; Konig et al., 2011; Hafner et al., 2010). We want to thank the Group of Mihaela Zavolan (Swiss Institute of Bioinformatics, Basel, Switzerland) and Jernej Ule ...
[摘要] mRNA的命运，特别是其稳定性，定位和翻译速率由装配到信使核糖核蛋白（mRNP）复合物的RNA结合蛋白调节。 为了研究无义介导的mRNA衰变（NMD）的核心因子UPF1的转录组范围的RNA结合位点，我们进行单个核苷酸分辨率的UV交联和免疫沉淀（iCLIP）（Zund等，/em>，2013），然后进行高通量测序。 优化所提出的方案以研究UPF1的RNA结合位点并且基于先前描述的研究（Konig等人，2010; Konig等人，2011; Hafner等人，2010）。 我们要感谢Mihaela Zavolan（瑞士巴塞尔瑞士生物信息学研究所）和Jernej Ule（英国剑桥的分子生物学医学研究委员会实验室）组织这些实验的技术支持。
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