| A Ribosome Footprinting Protocol for Plants
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Author:
Date:
2016-11-05
[Abstract] Ribosome footprinting, or Ribo-seq, has revolutionized the studies of translation. It was originally developed for yeast and mammalian cells in culture (Ingolia et al., 2009). Herein, we describe a plant-optimized hands-on ribosome footprinting protocol derived from previously published procedures of polysome isolation (Ingolia et al., 2009; Mustroph et al., 2009) and ribosome footprinting (Ingolia et al., 2009; Ingolia et al., 2013). With this protocol, we have been able to successfully isolate and analyze high-quality ribosomal footprints from different stages of in vitro grown Arabidopsis thaliana plants (dark-grown seedlings [Merchante et al., 2015] and 13-day-old plantlets in plates and plants grown in liquid ...
[摘要] 核糖体足迹或Ribo-seq，彻底改变了翻译研究。它最初是为培养中的酵母和哺乳动物细胞开发的（Ingolia等人，2009）。本文中，我们描述了来自先前公开的多核糖体分离程序的植物优化的亲手核糖体印迹方案（Ingolia等人，2009; Mustroph等人，2009 ）和核糖体印迹（Ingolia等人，2009; Ingolia等人，2013）。使用该协议，我们能够成功地分离和分析来自体外生长的拟南芥植物（黑暗生长的幼苗）的不同阶段的高质量核糖体印迹[Merchante < ，以及在液体培养物中生长的板和植物中的13天龄小植物[未发表的结果]）。
[背景] 翻译在调节基因活性中的中心作用早已被公认，但是在响应于特定刺激的全基因组翻译定量变化的系统探索最近才变得技术上可行。最初为培养中的酵母和哺乳动物细胞开发的核糖体印迹技术（通常称为Ribo-seq）已经彻底改变了翻译调节和基因表达的研究，因为其允许确定核糖体在基因组 - ...
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| In Gel Detection of Lipase Activity in Crude Plant Extracts (Olea europaea)
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Author:
Date:
2015-04-20
[Abstract] Here, we provide a detailed protocol describing a SDS-PAGE based procedure to assay in gel neutral lipase activity. Total protein extracts are separated by SDS-PAGE and gels are treated with lipase substrate-α-naphthyl palmitate. This long-chain fatty acid ester is hydrolysed by lipases present in the gel. The product resulting from this reaction can be then visualized in the gel as yellow-brownish activity bands. This relatively simple and effective method of lipase assay detection can be used for crude protein extracts from different plant tissues.
[摘要] 在这里，我们提供详细的协议描述基于SDS-PAGE的程序来测定凝胶中性脂肪酶活性。 通过SDS-PAGE分离总蛋白提取物，并用脂肪酶底物-α-棕榈酸萘酯处理凝胶。 这种长链脂肪酸酯被存在于凝胶中的脂肪酶水解。 由该反应产生的产物然后可以在凝胶中显现为黄棕色活性带。 这种相对简单和有效的脂肪酶测定法可用于来自不同植物组织的粗蛋白提取物。
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| Purification and Detection of a PDGA Depolymerase from Pusillimonas noertemannii
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Author:
Date:
2014-11-05
[Abstract] The purification of a target protein from a complex mixture of proteins is a challenging undertaking. If the target protein has been previously characterised, then information such as subcellular location, function, molecular weight and pI can be used for the design of a purification strategy. However, if the target protein is uncharacterised or little information regarding its characteristics is available, a generic purification protocol can be employed that is optimised as additional characteristics of the target protein are determined during subsequent purification steps. Herein, we describe the protocol for the purification and detection of a poly-γ-D-glutamic acid (PDGA) depolymerase from a consortium culture of two Gram-negative bacteria using a combination of chromatography, ...
[摘要] 从蛋白质的复杂混合物中纯化靶蛋白是一项具有挑战性的任务。 如果靶蛋白以前已被表征，则诸如亚细胞定位，功能，分子量和pI的信息可用于设计纯化策略。 然而，如果目标蛋白质是未表征的或者关于其特征的很少的信息可用，则可以使用通用的纯化方案，其随着在随后的纯化步骤期间测定靶标蛋白质的附加特征而被优化。 在这里，我们描述了从两个革兰氏阴性细菌的联合培养物使用色谱，2D电泳和酶谱的组合纯化和检测聚-γ-D-谷氨酸（PDGA）解聚酶的协议。
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